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Browsing by Author "Ragimbeau, Catherine"
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2020-11-25ZeitschriftenartikelMetagenomics-Based Proficiency Test of Smoked Salmon Spiked with a Mock Community Sala, Claudia; Mordhorst, Hanne; Grützke, Josephine; Brinkmann, Annika; Petersen, Thomas N.; Poulsen, Casper; Cotter, Paul D.; Crispie, Fiona; Ellis, Richard J.; Castellani, Gastone; Amid, Clara; Hakhverdyan, Mikhayil; Le Guyader, Soizick; Manfreda, Gerardo; Mossong, Joël; Nitsche, Andreas; Ragimbeau, Catherine; Schaeffer, Julien; Schlundt, Joergen; Tay, Moon Y. F.; Aarestrup, Frank M.; Hendriksen, Rene S.; Pamp, Sünje Johanna; De Cesare, AlessandraAn inter-laboratory proficiency test was organized to assess the ability of participants to perform shotgun metagenomic sequencing of cold smoked salmon, experimentally spiked with a mock community composed of six bacteria, ...
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2020-08-11ZeitschriftenartikelResFinder 4.0 for predictions of phenotypes from genotypes Bortolaia, Valeria; Kaas, Rolf; Ruppe, Etienne; Roberts, Marilyn C.; Schwarz, Stefan; Cattoir, Vincent; Philippon, Alain; Allesoe, Rosa L.; Rebelo, Ana Rita; Florensa, Alfred Ferrer; Fagelhauer, Linda; Chakraborty, Trinad; Neumann, Bernd; Werner, Guido; K. Bender, Jennifer; Stingl, Kerstin; Nguyen, Minh; Coppens, Jasmine; Xavier, Basil Britto; Malhotra-Kumar, Surbhi; Westh, Henrik; Pinholt, Mette; Anjum, Muna F.; Duggett, Nicholas A.; Kempf, Isabelle; Nykäsenoja, Suvi; Olkkola, Satu; Wieczorek, Kinga; Amaro, Ana; Clemente, Lurdes; Mossong, Joël; Losch, Serge; Ragimbeau, Catherine; Lund, Ole; Aarestrup, Frank M.Objectives WGS-based antimicrobial susceptibility testing (AST) is as reliable as phenotypic AST for several antimicrobial/bacterial species combinations. However, routine use of WGS-based AST is hindered by the need ...
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2019-09-05ZeitschriftenartikelSalmonellosis outbreak with novel Salmonella enterica subspecies enterica serotype (11:z41:e,n,z15) attributable to sesame products in five European countries, 2016 to 2017 Meinen, Anika; Simon, Sandra; Banerji, Sangeeta; Szabo, Istvan; Malorny, Burkhard; Borowiak, Maria; Hadziabdic, Sead; Becker, Natalie; Luber, Petra; Lohr, Dorothee; Harms, Carolin; Plenge-Bönig, Anita; Mellou, Kassiani; Mandilara, Georgia; Mossong, Joël; Ragimbeau, Catherine; Weicherding, Pierre; Hau, Patrick; Dědičová, Daniela; Šafaříková, Lucie; Nair, Satheesh; Dallman, Timothy J.; Larkin, Lesley; McCormick, Jacquelyn; De Pinna, Elizabeth; Severi, Ettore; Kotila, Saara; Niskanen, Taina; Rizzi, Valentina; Deserio, Domenico; Flieger, Antje; Stark, KlausIn spring 2016, Greece reported an outbreak caused by a previously undescribed Salmonellaenterica subsp. enterica serotype (antigenic formula 11:z41:e,n,z15) via the Epidemic Intelligence Information System for Food- and ...