Auflistung nach Autor "Tausch, Simon H."

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2017-10-01Zeitschriftenartikel

Berlin Squirrelpox Virus, a New Poxvirus in Red Squirrels, Berlin, Germany

Wibbelt, Gudrun; Tausch, Simon H.; Dabrowski, Piotr Wojtek; Kershaw, Olivia; Nitsche, Andreas; Schrick, Livia

Near Berlin, Germany, several juvenile red squirrels (Sciurus vulgaris) were found with moist, crusty skin lesions. Histology, electron microscopy, and cell culture isolation revealed an orthopoxvirus-like infection. ...
2018-09-08Zeitschriftenartikel

PAIPline: pathogen identification in metagenomic and clinical next generation sequencing samples

Andrusch, Andreas; Dabrowski, Piotr Wojtek; Klenner, Jeanette; Tausch, Simon H.; Kohl, Claudia; Osman, Abdalla A.; Renard, Bernhard Y.; Nitsche, Andreas

Motivation: Next generation sequencing (NGS) has provided researchers with a powerful tool to characterize metagenomic and clinical samples in research and diagnostic settings. NGS allows an open view into samples useful ...
2022-08-30Zeitschriftenartikel

PathoLive—Real-Time Pathogen Identification from Metagenomic Illumina Datasets

Tausch, Simon H.; Loka, Tobias P.; Schulze, Jakob M.; Andrusch, Andreas; Klenner, Jeanette; Dabrowski, Piotr Wojciech; Lindner, Martin S.; Nitsche, Andreas; Renard, Bernhard Y.

Over the past years, NGS has become a crucial workhorse for open-view pathogen diagnostics. Yet, long turnaround times result from using massively parallel high-throughput technologies as the analysis can only be performed ...
2015-09-17Zeitschriftenartikel

RAMBO-K: Rapid and Sensitive Removal of Background Sequences from Next Generation Sequencing Data

Tausch, Simon H.; Renard, Bernhard Y.; Nitsche, Andreas; Dabrowski, Piotr Wojciech

Background: The assembly of viral or endosymbiont genomes from Next Generation Sequencing (NGS) data is often hampered by the predominant abundance of reads originating from the host organism. These reads increase the ...
2021-02-10Zeitschriftenartikel

Toward an Integrated Genome-Based Surveillance of Salmonella enterica in Germany

Uelze, Laura; Becker, Natalie; Borowiak, Maria; Busch, Ulrich; Dangel, Alexandra; Deneke, Carlus; Fischer, Jennie; Flieger, Antje; Hepner, Sabrina; Huber, Ingrid; Methner, Ulrich; Linde, Jörg; Pietsch, Michael; Simon, Sandra; Sing, Andreas; Tausch, Simon H.; Szabo, Istvan; Malorny, Burkhard

Despite extensive monitoring programs and preventative measures, Salmonella spp. continue to cause tens of thousands human infections per year, as well as many regional and international food-borne outbreaks, that are of ...
2021-09-09Zeitschriftenartikel

What WGS Reveals about Salmonella enterica subsp. enterica in Wildlife in Germany

Uelze, Laura; Bloch, Angelina; Borowiak, Maria; Grobbel, Mirjam; Deneke, Carlus; Fischer, Matthias; Malorny, Burkhard; Pietsch, Michael; Simon, Sandra; Szabó, István; Tausch, Simon H.; Fischer, Jennie

The aim of this study was to gain an overview of the genetic diversity of Salmonella found in wildlife in Germany. We were particularly interested in exploring whether wildlife acts as a reservoir of certain serovars/subtypes ...
2018-10-06Zeitschriftenartikel

Whole Genome Characterization of Orthopoxvirus (OPV) Abatino, a Zoonotic Virus Representing a Putative Novel Clade of Old World Orthopoxviruses

Gruber, Cesare E. M.; Giombini, Emanuela; Selleri, Marina; Tausch, Simon H.; Andrusch, Andreas; Tyshaieva, Alona; Cardeti, Giusy; Lorenzetti, Raniero; De Marco, Lorenzo; Carletti, Fabrizio; Nitsche, Andreas; Capobianchi, Maria R.; Ippolito, Giuseppe; Autorino, Gian Luca; Castilletti, Concetta

Orthopoxviruses (OPVs) are diffused over the complete Eurasian continent, but previously described strains are mostly from northern Europe, and few infections have been reported from Italy. Here we present the extended ...