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Browsing by Author "Aarestrup, Frank M."
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2019-03-08ZeitschriftenartikelGlobal monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage Hendriksen, Rene S.; Munk, Patrick; Njage, Patrick; van Bunnik, Bram; McNally, Luke; Lukjancenko, Oksana; Röder, Timo; Nieuwenhuijse, David; Karlsmose Pedersen, Susanne; Kjeldgaard, Jette; Kaas, Rolf S.; Lanken Conradsen Clausen, Philip Thomas; Vogt, Josef Korbinian; Leekitcharoenphon, Pimlapas; van de Schans, Milou G. M.; Zuidema, Tina; de Roda Husman, Ana Maria; Rasmussen, Simon; Petersen, Bent; The Global Sewage Surveillance project consortium; Amid, Clara; Cochrane, Guy; Sicheritz-Ponten, Thomas; Schmitt, Heike; Alvarez, Jorge Raul Matheu; Aidara-Kane, Awa; Pamp, Sünje J.; Lund, Ole; Hald, Tine; Woolhouse, Mark; Koopmans, Marion P.; Vigre, Håkan; Nordahl Petersen, Thomas; Aarestrup, Frank M.Antimicrobial resistance (AMR) is a serious threat to global public health, but obtaining representative data on AMR for healthy human populations is difficult. Here, we use metagenomic analysis of untreated sewage to ...
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2020-11-25ZeitschriftenartikelMetagenomics-Based Proficiency Test of Smoked Salmon Spiked with a Mock Community Sala, Claudia; Mordhorst, Hanne; Grützke, Josephine; Brinkmann, Annika; Petersen, Thomas N.; Poulsen, Casper; Cotter, Paul D.; Crispie, Fiona; Ellis, Richard J.; Castellani, Gastone; Amid, Clara; Hakhverdyan, Mikhayil; Le Guyader, Soizick; Manfreda, Gerardo; Mossong, Joël; Nitsche, Andreas; Ragimbeau, Catherine; Schaeffer, Julien; Schlundt, Joergen; Tay, Moon Y. F.; Aarestrup, Frank M.; Hendriksen, Rene S.; Pamp, Sünje Johanna; De Cesare, AlessandraAn inter-laboratory proficiency test was organized to assess the ability of participants to perform shotgun metagenomic sequencing of cold smoked salmon, experimentally spiked with a mock community composed of six bacteria, ...
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2019-07-26ZeitschriftenartikelProficiency Testing of Virus Diagnostics Based on Bioinformatics Analysis of Simulated In Silico High-Throughput Sequencing Data Sets Brinkmann, Annika; Andrusch, Andreas; Belka, Ariane; Wylezich, Claudia; Höper, Dirk; Pohlmann, Anne; Nordahl Petersen, Thomas; Lucas, Pierrick; Blanchard, Yannick; Papa, Anna; Melidou, Angeliki; Oude Munnink, Bas B.; Matthijnssens, Jelle; Deboutte, Ward; Ellis, Richard J.; Hansmann, Florian; Baumgärtner, Wolfgang; van der Vries, Erhard; Osterhaus, Albert; Camma, Cesare; Mangone, Iolanda; Lorusso, Alessio; Marcacci, Maurilia; Nunes, Alexandra; Pinto, Miguel; Borges, Vítor; Kroneman, Annelies; Schmitz, Dennis; Corman, Victor Max; Drosten, Christian; Jones, Terry C.; Hendriksen, Rene S.; Aarestrup, Frank M.; Koopmans, Marion; Beer, Martin; Nitsche, AndreasQuality management and independent assessment of high-throughput sequencing-based virus diagnostics have not yet been established as a mandatory approach for ensuring comparable results. The sensitivity and specificity of ...