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Auflistung nach Autor "Deneke, Carlus"
Anzeige der Publikationen 1-4 von 4
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2017-01-04ZeitschriftenartikelPaPrBaG: A machine learning approach for the detection of novel pathogens from NGS data Deneke, Carlus; Rentzsch, Robert; Renard, Bernhard Y.The reliable detection of novel bacterial pathogens from next-generation sequencing data is a key challenge for microbial diagnostics. Current computational tools usually rely on sequence similarity and often fail to detect ...
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2021-02-10ZeitschriftenartikelToward an Integrated Genome-Based Surveillance of Salmonella enterica in Germany Uelze, Laura; Becker, Natalie; Borowiak, Maria; Busch, Ulrich; Dangel, Alexandra; Deneke, Carlus; Fischer, Jennie; Flieger, Antje; Hepner, Sabrina; Huber, Ingrid; Methner, Ulrich; Linde, Jörg; Pietsch, Michael; Simon, Sandra; Sing, Andreas; Tausch, Simon H.; Szabo, Istvan; Malorny, BurkhardDespite extensive monitoring programs and preventative measures, Salmonella spp. continue to cause tens of thousands human infections per year, as well as many regional and international food-borne outbreaks, that are of ...
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2021-09-09ZeitschriftenartikelWhat WGS Reveals about Salmonella enterica subsp. enterica in Wildlife in Germany Uelze, Laura; Bloch, Angelina; Borowiak, Maria; Grobbel, Mirjam; Deneke, Carlus; Fischer, Matthias; Malorny, Burkhard; Pietsch, Michael; Simon, Sandra; Szabó, István; Tausch, Simon H.; Fischer, JennieThe aim of this study was to gain an overview of the genetic diversity of Salmonella found in wildlife in Germany. We were particularly interested in exploring whether wildlife acts as a reservoir of certain serovars/subtypes ...
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2020-02-28ZeitschriftenartikelWhole genome sequencing reveals extended natural transformation in Campylobacter impacting diagnostics and the pathogens adaptive potential Golz, Julia C.; Epping, Lennard; Knüver, Marie-Theres; Borowiak, Maria; Hartkopf, Felix; Deneke, Carlus; Malorny, Burkhard; Semmler, Torsten; Stingl, KerstinCampylobacter is the major bacterial agent of human gastroenteritis worldwide and represents a crucial global public health burden. Species differentiation of C. jejuni and C. coli and phylogenetic analysis is challenged ...