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Browsing by Author "Jandrasits, Christine"
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2019-12-09ZeitschriftenartikelComputational pan-genome mapping and pairwise SNP-distance improve detection of Mycobacterium tuberculosis transmission clusters Jandrasits, Christine; Kröger, Stefan; Haas, Walter; Renard, Bernhard Y.Next-generation sequencing based base-by-base distance measures have become an integral complement to epidemiological investigation of infectious disease outbreaks. This study introduces PANPASCO, a computational pan-genome ...
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2020-01-14ZeitschriftenartikelImproving tuberculosis surveillance by detecting international transmission using publicly available whole genome sequencing data Sanchini, Andrea; Jandrasits, Christine; Tembrockhaus, Julius; Kohl, Thomas Andreas; Utpatel, Christian; Maurer, Florian P.; Niemann, Stefan; Haas, Walter; Renard, Bernhard Y.; Kröger, StefanImproving the surveillance of tuberculosis (TB) is one of the eight core activities identified by the World Health Organization (WHO) and the European Respiratory Society to achieve TB elimination, defined as less than one ...
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2018-01-15Zeitschriftenartikelseq-seq-pan: building a computational pan-genome data structure on whole genome alignment Jandrasits, Christine; Dabrowski, Piotr Wojtek; Fuchs, Stephan; Renard, Bernhard Y.Background: The increasing application of next generation sequencing technologies has led to the availability of thousands of reference genomes, often providing multiple genomes for the same or closely related species. ...