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Auflistung nach Autor "Hölzer, Martin"
Anzeige der Publikationen 1-12 von 12
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2020-10-08ZeitschriftenartikelA decade of de novo transcriptome assembly: Are we there yet? Hölzer, MartinA decade ago, de novo transcriptome assembly evolved as a versatile and powerful approach to make evolutionary assumptions, analyse gene expression, and annotate novel transcripts, in particular, for non‐model organisms ...
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2021-05-12ZeitschriftenartikelComparison of Illumina and Oxford Nanopore Technology for genome analysis of Francisella tularensis, Bacillus anthracis, and Brucella suis Linde, Jörg; Brangsch, Hanka; Hölzer, Martin; Thomas, Christine; Elschner, Mandy C.; Melzer, Falk; Tomaso, HerbertBackground Bacterial epidemiology needs to understand the spread and dissemination of strains in a One Health context. This is important for highly pathogenic bacteria such as Bacillus anthracis, Brucella species, and ...
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2020-11-04ZeitschriftenartikelComputational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research Hufsky, Franziska; Lamkiewicz, Kevin; Almeida, Alexandre; Aouacheria, Abdel; Arighi, Cecilia; Bateman, Alex; Baumbach, Jan; Beerenwinkel, Niko; Brandt, Christian; Cacciabue, Marco; Chuguransky, Sara; Drechsel, Oliver; Finn, Robert D; Fritz, Adrian; Fuchs, Stephan; Hattab, Georges; Hauschild, Anne-Christin; Heider, Dominik; Hoffmann, Marie; Hölzer, Martin; Hoops, Stefan; Kaderali, Lars; Kalvari, Ioanna; von Kleist, Max; Kmiecinski, Renó; Kühnert, Denise; Lasso, Gorka; Libin, Pieter; List, Markus; Löchel, Hannah F.; Martin, Maria J.; Martin, Roman; Matschinske, Julian; McHardy, Alice C.; Mendes, Pedro; Mistry, Jaina; Navratil, Vincent; Nawrocki, Eric P.; O'Toole, Áine Niamh; Ontiveros-Palacios, Nancy; Petrov, Anton I; Rangel-Pineros, Guillermo; Redaschi, Nicole; Reimering, Susanne; Reinert, Knut; Reyes, Alejandro; RIchardson, Lorna; Robertson, David L.; Sadegh, Sepideh; Singer, Joshua B.; Theys, Kristof; Upton, Chris; Welzel, Marius; Williams, Lowri; Marz, ManjaSARS-CoV-2 (severe acute respiratory syndrome coronavirus 2) is a novel virus of the family Coronaviridae. The virus causes the infectious disease COVID-19. The biology of coronaviruses has been studied for many years. ...
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2021-12-16ZeitschriftenartikelContext-aware genomic surveillance reveals hidden transmission of a carbapenemase-producing Klebsiella pneumoniae Viehweger, Adrian; Blumenscheit, Christian; Lippmann, Norman; Wyres, Kelly L.; Brandt, Christian; Hans, Jörg B.; Hölzer, Martin; Irber, Luiz; Gatermann, Sören; Lübbert, Christoph; Pletz, Mathias W.; Holt, Kathryn E.; König, BrigitteGenomic surveillance can inform effective public health responses to pathogen outbreaks. However, integration of non-local data is rarely done. We investigate two large hospital outbreaks of a carbapenemase-carrying ...
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2022-02-16ZeitschriftenartikelEditorial: The Transition Era to New Sequencing Technologies and Their Application to Integrative Omics in Molecular Surveillance Hölzer, Martin; Escobar-Zepeda, Alejandra; Linde, Jörg; Horn, Fabian
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2022-01-04ZeitschriftenartikelInvestigation of a Limited but Explosive COVID-19 Outbreak in a German Secondary School Baumgarte, Sigrid; Hartkopf, Felix; Hölzer, Martin; von Kleist, Max; Neitz, Sabine; Kriegel, Martin; Bollongino, KirstenThe role of schools as a source of infection and driver in the coronavirus-pandemic has been controversial and is still not completely clarified. To prevent harm and disadvantages for children and adolescents, but also ...
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2022-03-22ZeitschriftenartikelNear Chromosome-Level Genome Assembly and Annotation of Rhodotorula babjevae Strains Reveals High Intraspecific Divergence Martín-Hernández, Giselle C.; Müller, Bettina; Brandt, Christian; Hölzer, Martin; Viehweger, Adrian; Passoth, VolkmarThe genus Rhodotorula includes basidiomycetous oleaginous yeast species. Rhodotorula babjevae can produce compounds of biotechnological interest such as lipids, carotenoids, and biosurfactants from low value substrates ...
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2021-07-21ZeitschriftenartikelRise and Fall of SARS-CoV-2 Lineage A.27 in Germany Calvignac-Spencer, Sébastien; Budt, Matthias; Huska, Matthew; Richard, Hugues; Leipold, Luca; Grabenhenrich, Linus; Semmler, Torsten; von Kleist, Max; Kröger, Stefan; Wolff, Thorsten; Hölzer, MartinHere, we report on the increasing frequency of the SARS-CoV-2 lineage A.27 in Germany during the first months of 2021. Genomic surveillance identified 710 A.27 genomes in Germany as of 2 May 2021, with a vast majority ...
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2020-12-10ZeitschriftenartikelRNAflow: An Effective and Simple RNA-Seq Differential Gene Expression Pipeline Using Nextflow Lataretu, Marie; Hölzer, MartinRNA-Seq enables the identification and quantification of RNA molecules, often with the aim of detecting differentially expressed genes (DEGs). Although RNA-Seq evolved into a standard technique, there is no universal gold ...
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2020-12-10ZeitschriftenartikelRNAflow: An Effective and Simple RNA-Seq Differential Gene Expression Pipeline Using Nextflow Lataretu, Marie; Hölzer, MartinRNA-Seq enables the identification and quantification of RNA molecules, often with the aim of detecting differentially expressed genes (DEGs). Although RNA-Seq evolved into a standard technique, there is no universal gold ...
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2021-03-05ZeitschriftenartikelSARS-CoV-2-Varianten: Evolution im Zeitraffer Oh, Djin-Ye; Kröger, Stefan; Wedde, Marianne; Hartkopf, Felix; Budt, Matthias; Seifried, Janna; Radonic, Aleksandar; Belarbi, Essia; Hölzer, Martin; Böttcher, Sindy; Schubert, Grit; Kaiser, Sandra; Sachse, Andreas; Drechsel, Oliver; Grajcar, Romina; Huska, Matthew; Lanxin, Zhan; Domaszewska, Teresa; Zhang, Lanxin; Brinkmann, Annika; Yahosseini, Kyanoush; Grabenhenrich, Linus; Hamouda, Osamah; Dürrwald, Ralf; Haas, Walter; Calvignac-Spencer, Sébastien; Semmler, Torsten; Schaade, Lars; Mielke, Martin; von Kleist, Max; Fuchs, Stephan; Wieler, Lothar H.; Wolff, ThorstenDas Betacoronavirus SARS-CoV-2 gelangte höchstwahrscheinlich als zoonotischer Erreger gegen Ende 2019 in die menschliche Bevölkerung, vermutlich in Form einer einzelnen Transmission (monophyletischer Ursprung) aus einem ...
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2022-06-02ZeitschriftenartikelSynopse virologischer Analysen im Nationalen Referenzzentrum für Influenzaviren während der COVID-19-Pandemie Dürrwald, Ralf; Wedde, Marianne; Duwe, Susanne; Biere, Barbara; Reiche, Janine; Köndgen, Sophie; Ramos Calderón, Julia Patricia; Budt, Matthias; Drechsel, Oliver; Fuchs, Stephan; Haldemann, Berit; Hartkopf, Felix; Hölzer, Martin; Huska, Matthew; Kaiser, Sandra; Keeren, Kathrin; Kröger, Stefan; Paraskevopoulou, Sofia; Radonic, Aleksandar; Reinhardt, Bernd; Semmler, Torsten; Thürmer, Andrea; Trappe, Kathrin; Winter, Katja; Mielke, Martin; Buda, Silke; Oh, Djin-Ye; Wolff, ThorstenDas Nationale Referenzzentrum für Influenzaviren gewinnt durch die fortlaufende Untersuchung von Proben aus den Sentinelpraxen der Arbeitsgemeinschaft Influenza einen umfassenden Überblick über die zirkulierenden ...