Auflistung nach Schlagwort "Algorithms"
Anzeige der Publikationen 1-16 von 16
-
2008-10-01ZeitschriftenartikelAutomatic outbreak detection algorithm versus electronic reporting system. To determine efficacy of automatic outbreak detection algorithms (AODAs), we analyzed 3,582 AODA signals and 4,427 reports of outbreaks caused by Campylobacter spp. or norovirus during 2005-2006 in Germany. Local health ...
-
2019-03-19ZeitschriftenartikelDigital epidemiology and global health security; an interdisciplinary conversation Contemporary infectious disease surveillance systems aim to employ the speed and scope of big data in an attempt to provide global health security. Both shifts - the perception of health problems through the framework of ...
-
2013-08-07ZeitschriftenartikelEyjafjallajökull and 9/11: The Impact of Large-Scale Disasters on Worldwide Mobility Large-scale disasters that interfere with globalized socio-technical infrastructure, such as mobility and transportation networks, trigger high socio-economic costs. Although the origin of such events is often geographically ...
-
2012-07-02ZeitschriftenartikelHigh Resolution Discrimination of Clinical Mycobacterium tuberculosis Complex Strains Based on Single Nucleotide Polymorphisms Recently, the diversity of the Mycobacterium tuberculosis complex (MTBC) population structure has been described in detail. Based on geographical separation and specific host pathogen co-evolution shaping MTBC virulence ...
-
2014-03-20ZeitschriftenartikelLaboratory diagnosis of paediatric tuberculosis in the European Union/European Economic Area: analysis of routine laboratory data, 2007 to 2011 Laboratory confirmation of paediatric tuberculosis (TB) is frequently lacking. We reviewed the range of routine laboratory tests and their performance in different biological samples used to diagnose active TB in children. ...
-
2012-08-31ZeitschriftenartikelMetagenomic abundance estimation and diagnostic testing on species level One goal of sequencing-based metagenomic community analysis is the quantitative taxonomic assessment of microbial community compositions. In particular, relative quantification of taxons is of high relevance for metagenomic ...
-
2013-06-12ZeitschriftenartikelMinimising contributions from scattering in infrared spectra by means of an integrating sphere Mid-infrared spectra of biological matter such as tissues or microbial and eukaryotic cells measured in a transmission-type optical setup frequently show strongly distorted line shapes which arise from mixing of absorption ...
-
2015-06-15ZeitschriftenartikelMSProGene: integrative proteogenomics beyond six-frames and single nucleotide polymorphisms Ongoing advances in high-throughput technologies have facilitated accurate proteomic measurements and provide a wealth of information on genomic and transcript level. In proteogenomics, this multi-omics data is combined ...
-
2012-04-06ZeitschriftenartikelOvercoming Species Boundaries in Peptide Identification with Bayesian Information Criterion-driven Error-tolerant Peptide Search (BICEPS) Currently, the reliable identification of peptides and proteins is only feasible when thoroughly annotated sequence databases are available. Although sequencing capacities continue to grow, many organisms remain without ...
-
2012-04-06ZeitschriftenartikelOvercoming species boundaries in peptide identification with BICEPS Currently, the reliable identification of peptides and proteins is only feasible when thoroughly annotated sequence databases are available. While sequencing capacities continue to grow, many organisms remain without ...
-
2014-06-15ZeitschriftenartikelPipasic: similarity and expression correction for strain-level identification and quantification in metaproteomics Motivation: Metaproteomic analysis allows studying the interplay of organisms or functional groups and has become increasingly popular also for diagnostic purposes. However, difficulties arise owing to the high sequence ...
-
2010-09-09ZeitschriftenartikelPractical usage of computer-supported outbreak detection in five European countries This paper discusses computer-supported outbreak detection using routine surveillance data, as implemented at six institutes for infectious disease control in five European countries. We give an overview of the systems ...
-
2015-09-17ZeitschriftenartikelRAMBO-K: Rapid and Sensitive Removal of Background Sequences from Next Generation Sequencing Data Background: The assembly of viral or endosymbiont genomes from Next Generation Sequencing (NGS) data is often hampered by the predominant abundance of reads originating from the host organism. These reads increase the ...
-
2011-08-04Zeitschriftenartikelrapmad: Robust analysis of peptide microarray data Background: Peptide microarrays offer an enormous potential as a screening tool for peptidomics experiments and have recently seen an increased field of application ranging from immunological studies to systems biology. ...
-
2015-04-23ZeitschriftenartikelSpatial and Functional Heterogeneities Shape Collective Behavior of Tumor-Immune Networks Tumor growth involves a dynamic interplay between cancer cells and host cells, which collectively form a tumor microenvironmental network that either suppresses or promotes tumor growth under different conditions. The ...
-
2015-07-30ZeitschriftenartikelSuRankCo: supervised ranking of contigs in de novo assemblies Background: Evaluating the quality and reliability of a de novo assembly and of single contigs in particular is challenging since commonly a ground truth is not readily available and numerous factors may influence ...