Browsing Artikel in Fachzeitschriften by Author "Kaas, Rolf"

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2020-03-03Zeitschriftenartikel

Four European Salmonella Typhimurium datasets collected to develop WGS-based source attribution methods

Munck, Nanna; Leekitcharoenphon, Pimlapas; Litrup, Eva; Kaas, Rolf; Meinen, Anika; Guillier, Laurent; Tang, Yue; Malorny, Burkhard; Palma, Federica; Borowiak, Maria; Gourmelon, Michèle; Simon, Sandra; Banerji, Sangeeta; Petrovska, Liljana; Dallman, Timothy J.; Hald, Tine

Zoonotic Salmonella causes millions of human salmonellosis infections worldwide each year. Information about the source of the bacteria guides risk managers on control and preventive strategies. Source attribution is the ...
2019-03-08Zeitschriftenartikel

Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage

Hendriksen, Rene S.; Munk, Patrick; Njage, Patrick; van Bunnik, Bram; McNally, Luke; Lukjancenko, Oksana; Röder, Timo; Nieuwenhuijse, David; Karlsmose Pedersen, Susanne; Kjeldgaard, Jette; Kaas, Rolf S.; Lanken Conradsen Clausen, Philip Thomas; Vogt, Josef Korbinian; Leekitcharoenphon, Pimlapas; van de Schans, Milou G. M.; Zuidema, Tina; de Roda Husman, Ana Maria; Rasmussen, Simon; Petersen, Bent; The Global Sewage Surveillance project consortium; Amid, Clara; Cochrane, Guy; Sicheritz-Ponten, Thomas; Schmitt, Heike; Alvarez, Jorge Raul Matheu; Aidara-Kane, Awa; Pamp, Sünje J.; Lund, Ole; Hald, Tine; Woolhouse, Mark; Koopmans, Marion P.; Vigre, Håkan; Nordahl Petersen, Thomas; Aarestrup, Frank M.

Antimicrobial resistance (AMR) is a serious threat to global public health, but obtaining representative data on AMR for healthy human populations is difficult. Here, we use metagenomic analysis of untreated sewage to ...
2020-08-11Zeitschriftenartikel

ResFinder 4.0 for predictions of phenotypes from genotypes

Bortolaia, Valeria; Kaas, Rolf; Ruppe, Etienne; Roberts, Marilyn C.; Schwarz, Stefan; Cattoir, Vincent; Philippon, Alain; Allesoe, Rosa L.; Rebelo, Ana Rita; Florensa, Alfred Ferrer; Fagelhauer, Linda; Chakraborty, Trinad; Neumann, Bernd; Werner, Guido; K. Bender, Jennifer; Stingl, Kerstin; Nguyen, Minh; Coppens, Jasmine; Xavier, Basil Britto; Malhotra-Kumar, Surbhi; Westh, Henrik; Pinholt, Mette; Anjum, Muna F.; Duggett, Nicholas A.; Kempf, Isabelle; Nykäsenoja, Suvi; Olkkola, Satu; Wieczorek, Kinga; Amaro, Ana; Clemente, Lurdes; Mossong, Joël; Losch, Serge; Ragimbeau, Catherine; Lund, Ole; Aarestrup, Frank M.

Objectives WGS-based antimicrobial susceptibility testing (AST) is as reliable as phenotypic AST for several antimicrobial/bacterial species combinations. However, routine use of WGS-based AST is hindered by the need ...