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Browsing Artikel in Fachzeitschriften by Author "Albert, Jan"
Now showing items 1-14 of 14
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2018-05-18ZeitschriftenartikelEasy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver Wymant, Chris; Blanquart, François; Golubchik, Tanya; Gall, Astrid; Bakker, Margreet; Bezemer, Daniela; Croucher, Nicholas J.; Hall, Matthew; Hillebregt, Mariska; Ong, Swee Hoe; Ratmann, Oliver; Albert, Jan; Bannert, Norbert; Fellay, Jacques; Fransen, Katrien; Gourlay, Annabelle; Grabowski, M. Kate; Gunsenheimer-Bartmeyer, Barbara; Günthard, Huldrych F.; Kivelä, Pia; Kouyos, Roger; Laeyendecker, Oliver; Liitsola, Kirsi; Meyer, Laurence; Porter, Kholoud; Ristola, Matti; van Sighem, Ard; Berkhout, Ben; Cornelissen, Marion; Kellam, Paul; Reiss, Peter; Fraser, ChristopheStudying the evolution of viruses and their molecular epidemiology relies on accurate viral sequence data, so that small differences between similar viruses can be meaningfully interpreted. Despite its higher throughput ...
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2013-01-14ZeitschriftenartikelHIV-1 subtype distribution and its demographic determinants in newly diagnosed patients in Europe suggest highly compartmentalized epidemics Abecasis, Ana B.; Wensing, Annemarie M. J.; Paraskevis, Dimitris; Vercauteren, Jurgen; Theys, Kristof; Vijver, David A. M. C. van de; Albert, Jan; Asjö, Birgitta; Balotta, Claudia; Beshkov, Danail; Camacho, Ricardo J.; Clotet, Bonaventura; Gascun, Cillian De; Griskevicius, Algis; Grossman, Zehava; Hamouda, Osamah; Horban, Andrzej; Kolupajeva, Tatjana; Korn, Klaus; Kostrikis, Leon G.; Kücherer, ClaudiaBackground: Understanding HIV-1 subtype distribution and epidemiology can assist preventive measures and clinical decisions. Sequence variation may affect antiviral drug resistance development, disease progression, ...
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2014-07-21ZeitschriftenartikelIncrease in transmitted resistance to non-nucleoside reverse transcriptase inhibitors among newly diagnosed HIV-1 infections in Europe Frentz, Dineke; Vijver, David A. M. C. van de; Abecasis, Ana B.; Albert, Jan; Hamouda, Osamah; Jørgensen, Louise B.; Kücherer, Claudia; Struck, Daniel; Schmit, Jean-Claude; Vercauteren, Jurgen; Åsjö, Birgitta; Balotta, Claudia; Beshkov, Danail; Camacho, Ricardo J.; Clotet, Bonaventura; Coughlan, Suzie; Griskevicius, Algirdas; Grossman, Zehava; Horban, Andrzej; Kolupajeva, Tatjana; Korn, Klaus; Kostrikis, Leondios G.; Liitsola, Kirsi; Linka, Marek; Nielsen, ClausBackground: One out of ten newly diagnosed patients in Europe was infected with a virus carrying a drug resistant mutation. We analysed the patterns over time for transmitted drug resistance mutations (TDRM) using data ...
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2013-04-03ZeitschriftenartikelLimited cross-border infections in patients newly diagnosed with HIV in Europe Frentz, Dineke; Wensing, Annemarie M. J.; Albert, Jan; Paraskevis, Dimitrios; Abecasis, Ana B.; Hamouda, Osamah; Jørgensen, Louise B.; Kücherer, Claudia; Struck, Daniel; Schmit, Jean-Claude; Åsjö, Birgitta; Balotta, Claudia; Beshkov, Danail; Camacho, Ricardo J.; Clotet, Bonaventura; Coughlan, Suzie; Wit, Stéphane De; Griskevicius, Algirdas; Grossman, Zehava; Horban, Andrzej; Kolupajeva, Tatjana; Korn, Klaus; Kostrikis, Leondios G.; Liitsola, Kirsi; Linka, MarekBackground: International travel plays a role in the spread of HIV-1 across Europe. It is, however, not known whether international travel is more important for spread of the epidemic as compared to endogenous infections ...
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2021-04-30ZeitschriftenartikelMolecular Epidemiology and Evolutionary Trajectory of Emerging Echovirus 30, Europe Benschop, Kimberley S.M.; Broberg, Eeva K.; Hodcroft, Emma; Schmitz, Dennis; Albert, Jan; Baicus, Anda; Bailly, Jean-Luc; Baldvinsdottir, Gudrun; Berginc, Natasa; Blomqvist, Soile; Böttcher, Sindy; Bryttig, Mia; Bujaki, Erika; Cabrerizo, Maria; Celma, Cristina; Cinek, Ondrej; Claas, Eric C.J.; Cremer, Jeroen; Dean, Jonathan; Dembinski, Jennifer L.; Demchyshyna, Iryna; Diedrich, Sabine; Dudman, Susanne; Dunning, Jake; Dyrdak, Robert; Emmanouli, Mary; Farkas, Agnes; De Gascun, Cillian; Fournier, Guillaume; Georgieva, Irina; Gonzalez-Sanz, Ruben; van Hooydonk-Elving, Jolanda; Jääskeläinen, Anne J.; Jancauskaite, Ruta; Keeren, Kathrin; Fischer, Thea K.; Krokstad, Sidsel; Nikolaeva-Glomb, Lubomira; Novakova, Ludmila; Midgley, Sofie E.; Mirand, Audrey; Molenkamp, Richard; Morley, Ursula; Mossong, Joël; Muralyte, Svajune; Murk, Jean-Luc; Nguyen, Trung; Nordbø, Svein A.; Österback, Riika; Pas, Suzan; Pellegrinelli, Laura; Pogka, Vassiliki; Prochazka, Birgit; Rainetova, Petra; Van Rast, Marc; Roorda, Lieuwe; Schuffenecker, Isabelle; Schuurman, Rob; Asya, Stoyanova; Templeton, Kate; Verweij, Jaco J.; Voulgari-Kokota, Androniki; Vuorinen, Tytti; Wollants, Elke; Wolthers, Katja C.; Zakikhany, Katherina; Neher, Richard; Harvala, Heli; Simmonds, PeterIn 2018, an upsurge in echovirus 30 (E30) infections was reported in Europe. We conducted a large-scale epidemiologic and evolutionary study of 1,329 E30 strains collected in 22 countries in Europe during 2016–2018. Most ...
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2014-04-10ZeitschriftenartikelPatterns of Transmitted HIV Drug Resistance in Europe Vary by Risk Group Frentz, Dineke; Vijver, David van de; Abecasis, Ana B.; Albert, Jan; Hamouda, Osamah; Jørgensen, Louise; Kücherer, Claudia; Struck, Daniel; Schmit, Jean-Claude; Vercauteren, Jurgen; Åsjö, Birgitta; Balotta, Claudia; Bergin, Colm; Beshkov, Danail; Camacho, Ricardo; Clotet, Bonaventura; Griskevicius, Algirdas; Grossman, Zehava; Horban, Andrzej; Kolupajeva, Tatjana; Korn, Klaus; Kostrikis, Leondios; Liitsola, Kirsi; Nielsen, Claus; Otelea, DanBackground: In Europe, a continuous programme (SPREAD) has been in place for ten years to study transmission of drug resistant HIV. We analysed time trends of transmitted drug resistance mutations (TDRM) in relation to ...
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2022-03-16ZeitschriftenartikelPhylogenetic estimation of the viral fitness landscape of HIV-1 set-point viral load Zhao, Lele; Wymant, Chris; Blanquart, François; Golubchik, Tanya; Gall, Astrid; Bakker, Margreet; Bezemer, Daniela; Hall, Matthew; Hoe Ong, Swee; Albert, Jan; Bannert, Norbert; Fellay, Jacques; Grabowski, M. Kate; Gunsenheimer-Bartmeyer, Barbara; Günthard, Huldrych F.; Kivelä, Pia; Kouyos, Roger D.; Laeyendecker, Oliver; Meyer, Laurence; Porter, Kholoud; van Sighem, Ard; van der Valk, Marc; Berkhout, Ben; Kellam, Paul; Cornelissen, Marion; Reiss, Peter; Fraser, Christophe; Ferretti, Luca; on behalf of the BEEHIVE CollaborationSet-point viral load (SPVL), a common measure of human immunodeficiency virus (HIV)-1 virulence, is partially determined by viral genotype. Epidemiological evidence suggests that this viral property has been under stabilising ...
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2021-11-21ZeitschriftenartikelRe-emergence of enterovirus D68 in Europe after easing the COVID-19 lockdown, September 2021 Benschop, Kimberley SM; Albert, Jan; Anton, Andres; Andrés, Cristina; Aranzamendi, Maitane; Armannsdóttir, Brynja; Bailly, Jean-Luc; Baldanti, Fausto; Baldvinsdóttir, Guðrún Erna; Beard, Stuart; Berginc, Natasa; Böttcher, Sindy; Blomqvist, Soile; Bubba, Laura; Calvo, Cristina; Cabrerizo, Maria; Cavallero, Annalisa; Celma, Cristina; Ceriotti, Ferruccio; Costa, Inês; Cottrell, Simon; Cuerpo, Margarita del; Dean, Jonathan; Dembinski, Jennifer L; Diedrich, Sabine; Diez-Domingo, Javier; Dorenberg, Dagny Haug; Duizer, Erwin; Dyrdak, Robert; Fanti, Diana; Farkas, Agnes; Feeney, Susan; Flipse, Jacky; Gascun, Cillian De; Galli, Cristina; Georgieva, Irina; Gifford, Laura; Guiomar, Raquel; Hönemann, Mario; Ikonen, Niina; Jeannoël, Marion; Josset, Laurence; Keeren, Kathrin; López-Labrador, F Xavier; Maier, Melanie; McKenna, James; Meijer, Adam; Mengual-Chuliá, Beatriz; Midgley, Sofie E; Mirand, Audrey; Montes, Milagrosa; Moore, Catherine; Morley, Ursula; Murk, Jean-Luc; Nikolaeva-Glomb, Lubomira; Numanovic, Sanela; Oggioni, Massimo; Palminha, Paula; Pariani, Elena; Pellegrinelli, Laura; Piralla, Antonio; Pietsch, Corinna; Piñeiro, Luis; Rabella, Núria; Rainetova, Petra; Uceda Renteria, Sara Colonia; Romero, María P; Reynders, Marijke; Roorda, Lieuwe; Savolainen-Kopra, Carita; Schuffenecker, Isabelle; Soynova, Aysa; Swanink, Caroline MA; Ursic, Tina; Verweij, Jaco J; Vila, Jorgina; Vuorinen, Tytti; Simmonds, Peter; Fischer, Thea K; Harvala, HeliWe report a rapid increase in enterovirus D68 (EV-D68) infections, with 139 cases reported from eight European countries between 31 July and 14 October 2021. This upsurge is in line with the seasonality of EV-D68 and was ...
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2016-06-02ZeitschriftenartikelThe global spread of HIV-1 subtype B epidemic Magiorkinis, Gkikas; Angelis, Konstantinos; Mamais, Ioannis; Katzourakis, Aris; Hatzakis, Angelos; Albert, Jan; Lawyer, Glenn; Hamouda, Osamah; Struck, Daniel; Vercauteren, Jurgen; Wensing, Annemarie; Alexiev, Ivailo; Åsjö, Birgitta; Balotta, Claudia; Gomes, Perpétua; Camacho, Ricardo J.; Coughlan, Suzie; Griskevicius, Algirdas; Grossman, Zehava; Horban, Anders; Kostrikis, Leondios G.; Lepej, Snjezana J.; Liitsola, Kirsi; Linka, Marek; Nielsen, ClausHuman immunodeficiency virus type 1 (HIV-1) was discovered in the early 1980s when the virus had already established a pandemic. For at least three decades the epidemic in the Western World has been dominated by subtype B ...
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2009-05-20ZeitschriftenartikelTracing the HIV-1 subtype B mobility in Europe: a phylogeographic approach Paraskevis, Dimitrios; Pybus, Oliver; Magiorkinis, Gkikas; Hatzakis, Angelos; Wensing, Annemarie M. J.; Vijver, David A. M. C. van de; Albert, Jan; Angarano, Guiseppe; Hamouda, Osamah; Balotta, Claudia; Boeri, Enzo; Camacho, RicardoBackground: The prevalence and the origin of HIV-1 subtype B, the most prevalent circulating clade among the long-term residents in Europe, have been studied extensively. However the spatial diffusion of the epidemic ...
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2009-11-15ZeitschriftenartikelTransmission of Drug‐Resistant HIV‐1 is Stabilizing in Europe Vercauteren, Jurgen; Wensing, Annemarie M. J.; Vijver, David A. M. C. van de; Albert, Jan; Balotta, Claudia; Hamouda, Osamah; Kücherer, Claudia; Struck, Daniel; Schmit, Jean-Claude; Asjo, Birgitta; Bruckova, Marie; Camacho, Ricardo; Clotet, Bonaventura; Coughlan, Suzie; Grossman, Zehava; Horban, Andrzej; Korn, Klaus; Kostrikis, Leondios; Nielsen, Claus; Paraskevis, Dimitrios; Poljak, Mario; Puchhammer-Stöckl, Elisabeth; Riva, Chiara; Ruiz, Lidia; Salminen, MikaThe SPREAD Programme investigated prospectively the time trend from September 2002 through December 2005 of transmitted drug resistance (TDR) among 2793 patients in 20 European countries and in Israel with newly diagnosed ...
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2012-10-03ZeitschriftenartikelTreatment-associated polymorphisms in protease are significantly associated with higher viral load and lower CD4 count in newly diagnosed drug-naive HIV-1 infected patients Theys, Kristof; Deforche, Koen; Vercauteren, Jurgen; Libin, Pieter; Vijver, David A. M. C. van de; Albert, Jan; Åsjö, Birgitta; Balotta, Claudia; Bruckova, Marie; Camacho, Ricardo J.; Clotet, Bonaventura; Coughlan, Suzie; Grossman, Zehava; Hamouda, Osamah; Horban, Andrzei; Korn, Klaus; Kostrikis, Leondios G.; Kücherer, Claudia; Nielsen, Claus; Paraskevis, Dimitrios; Poljak, Mario; Puchhammer-Stockl, Elisabeth; Riva, Chiara; Ruiz, Lidia; Liitsola, KirsiBackground: The effect of drug resistance transmission on disease progression in the newly infected patient is not well understood. Major drug resistance mutations severely impair viral fitness in a drug free environment, ...
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2014-07-08ZeitschriftenartikelTrends and Predictors of Transmitted Drug Resistance (TDR) and Clusters with TDR in a Local Belgian HIV-1 Epidemic Pineda-Peña, Andrea-Clemencia; Schrooten, Yoeri; Vinken, Lore; Ferreira, Fossie; Li, Guangdi; Trovão, Nídia Sequeira; Khouri, Ricardo; Derdelinckx, Inge; Munter, Paul De; Kücherer, Claudia; Kostrikis, Leondios G.; Nielsen, Claus; Littsola, Kirsi; Wensing, Annemarie; Stanojevic, Maja; Paredes, Roger; Balotta, Claudia; Albert, Jan; Boucher, Charles; Gomez-Lopez, Arley; Wijngaerden, Eric van; Ranst, Marc van; Vercauteren, Jurgen; Vandamme, Anne-Mieke; Laethem, Kristel vanWe aimed to study epidemic trends and predictors for transmitted drug resistance (TDR) in our region, its clinical impact and its association with transmission clusters. We included 778 patients from the AIDS Reference ...
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2017-06-12ZeitschriftenartikelViral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe Blanquart, François; Wymant, Chris; Cornelissen, Marion; Gall, Astrid; Bakker, Margreet; Bezemer, Daniela; Hall, Matthew; Hillebregt, Mariska; Ong, Swee Hoe; Albert, Jan; Bannert, Norbert; Fellay, Jacques; Fransen, Katrien; Gourlay, Annabelle J.; Grabowski, M. Kate; Gunsenheimer-Bartmeyer, Barbara; Günthard, Huldrych F.; Kivelä, Pia; Kouyos, Roger; Laeyendecker, Oliver; Liitsola, Kirsi; Meyer, Laurence; Porter, Kholoud; Ristola, Matti; Sighem, Ard vanHIV-1 set-point viral load—the approximately stable value of viraemia in the first years of chronic infection—is a strong predictor of clinical outcome and is highly variable across infected individuals. To better understand ...