Browsing Artikel in Fachzeitschriften by Author "Aarestrup, Frank M."
Now showing items 1-6 of 6
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2022-01-05ZeitschriftenartikelEmergence of methicillin resistance predates the clinical use of antibiotics Larsen, Jesper; Raisen, Claire L.; Ba, Xiaoliang; Sadgrove, Nicholas J.; Padilla-González, Guillermo F.; Simmonds, Monique S.J.; Loncaric, Igor; Kerschner, Heidrun; Apfalter, Petra; Hartl, Rainer; Deplano, Ariane; Vendendriessche, Stien; Černá Bolfíková, Barbora; Hulva, Pavel; Arendrup, Maiken C.; Hare, Rasmus K.; Barnadas, Céline; Stegger, Marc; Sieber, Raphael N.; Skov, Robert L.; Petersen, Andreas; Angen, Øystein; Rasmussen, Sophie L.; Espinosa-Gongora, Carmen; Aarestrup, Frank M.; Lindholm, Laura J.; Nykäsenoja, Suvi M.; Laurent, Frederic; Becker, Karsten; Walther, Birgit; Kehrenberg, Corinna; Cuny, Christiane; Layer, Franziska; Werner, Guido; Witte, Wolfgang; Stamm, Ivonne; Moroni, Paolo; Jørgensen, Hannah J.; de Lencastre, Hermínia; Cercenado, Emilia; García-Garrote, Fernando; Börjesson, Stefan; Hæggman, Sara; Perreten, Vincent; Teale, Christopher J.; Waller, Andrew S.; Pichon, Bruno; Curran, Martin D.; Ellington, Matthew J.; Welch, John J.; Peacock, Sharon J.; Seilly, David J.; Morgan, Fiona J.E.; Parkhill, Julian; Hadjirin, Nazreen F.; Lindsay, Jodi A.; Holden, Matthew T.G.; Edwards, Giles F.; Foster, Geoffrey; Paterson, Gavin K.; Didelot, Xavier; Holmes, Mark A.; Harrison, Ewan M.; Larsen, Anders R.The discovery of antibiotics more than 80 years ago has led to considerable improvements in human and animal health. Although antibiotic resistance in environmental bacteria is ancient, resistance in human pathogens is ...
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2019-03-08ZeitschriftenartikelGlobal monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage Hendriksen, Rene S.; Munk, Patrick; Njage, Patrick; van Bunnik, Bram; McNally, Luke; Lukjancenko, Oksana; Röder, Timo; Nieuwenhuijse, David; Karlsmose Pedersen, Susanne; Kjeldgaard, Jette; Kaas, Rolf S.; Lanken Conradsen Clausen, Philip Thomas; Vogt, Josef Korbinian; Leekitcharoenphon, Pimlapas; van de Schans, Milou G. M.; Zuidema, Tina; de Roda Husman, Ana Maria; Rasmussen, Simon; Petersen, Bent; The Global Sewage Surveillance project consortium; Amid, Clara; Cochrane, Guy; Sicheritz-Ponten, Thomas; Schmitt, Heike; Alvarez, Jorge Raul Matheu; Aidara-Kane, Awa; Pamp, Sünje J.; Lund, Ole; Hald, Tine; Woolhouse, Mark; Koopmans, Marion P.; Vigre, Håkan; Nordahl Petersen, Thomas; Aarestrup, Frank M.Antimicrobial resistance (AMR) is a serious threat to global public health, but obtaining representative data on AMR for healthy human populations is difficult. Here, we use metagenomic analysis of untreated sewage to ...
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2020-11-25ZeitschriftenartikelMetagenomics-Based Proficiency Test of Smoked Salmon Spiked with a Mock Community Sala, Claudia; Mordhorst, Hanne; Grützke, Josephine; Brinkmann, Annika; Petersen, Thomas N.; Poulsen, Casper; Cotter, Paul D.; Crispie, Fiona; Ellis, Richard J.; Castellani, Gastone; Amid, Clara; Hakhverdyan, Mikhayil; Le Guyader, Soizick; Manfreda, Gerardo; Mossong, Joël; Nitsche, Andreas; Ragimbeau, Catherine; Schaeffer, Julien; Schlundt, Joergen; Tay, Moon Y. F.; Aarestrup, Frank M.; Hendriksen, Rene S.; Pamp, Sünje Johanna; De Cesare, AlessandraAn inter-laboratory proficiency test was organized to assess the ability of participants to perform shotgun metagenomic sequencing of cold smoked salmon, experimentally spiked with a mock community composed of six bacteria, ...
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2019-07-26ZeitschriftenartikelProficiency Testing of Virus Diagnostics Based on Bioinformatics Analysis of Simulated In Silico High-Throughput Sequencing Data Sets Brinkmann, Annika; Andrusch, Andreas; Belka, Ariane; Wylezich, Claudia; Höper, Dirk; Pohlmann, Anne; Nordahl Petersen, Thomas; Lucas, Pierrick; Blanchard, Yannick; Papa, Anna; Melidou, Angeliki; Oude Munnink, Bas B.; Matthijnssens, Jelle; Deboutte, Ward; Ellis, Richard J.; Hansmann, Florian; Baumgärtner, Wolfgang; van der Vries, Erhard; Osterhaus, Albert; Camma, Cesare; Mangone, Iolanda; Lorusso, Alessio; Marcacci, Maurilia; Nunes, Alexandra; Pinto, Miguel; Borges, Vítor; Kroneman, Annelies; Schmitz, Dennis; Corman, Victor Max; Drosten, Christian; Jones, Terry C.; Hendriksen, Rene S.; Aarestrup, Frank M.; Koopmans, Marion; Beer, Martin; Nitsche, AndreasQuality management and independent assessment of high-throughput sequencing-based virus diagnostics have not yet been established as a mandatory approach for ensuring comparable results. The sensitivity and specificity of ...
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2020-08-11ZeitschriftenartikelResFinder 4.0 for predictions of phenotypes from genotypes Bortolaia, Valeria; Kaas, Rolf; Ruppe, Etienne; Roberts, Marilyn C.; Schwarz, Stefan; Cattoir, Vincent; Philippon, Alain; Allesoe, Rosa L.; Rebelo, Ana Rita; Florensa, Alfred Ferrer; Fagelhauer, Linda; Chakraborty, Trinad; Neumann, Bernd; Werner, Guido; K. Bender, Jennifer; Stingl, Kerstin; Nguyen, Minh; Coppens, Jasmine; Xavier, Basil Britto; Malhotra-Kumar, Surbhi; Westh, Henrik; Pinholt, Mette; Anjum, Muna F.; Duggett, Nicholas A.; Kempf, Isabelle; Nykäsenoja, Suvi; Olkkola, Satu; Wieczorek, Kinga; Amaro, Ana; Clemente, Lurdes; Mossong, Joël; Losch, Serge; Ragimbeau, Catherine; Lund, Ole; Aarestrup, Frank M.Objectives WGS-based antimicrobial susceptibility testing (AST) is as reliable as phenotypic AST for several antimicrobial/bacterial species combinations. However, routine use of WGS-based AST is hindered by the need ...
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2020-08-13ZeitschriftenartikelSetting a baseline for global urban virome surveillance in sewage Nieuwenhuijse, David F.; Oude Munnink, Bas B.; Phan, My V. T.; the global sewage surveillance project consortium; Munk, Patrick; Venkatakrishnan, Shweta; Aarestrup, Frank M.; Cotten, Matthew; Koopmans, Marion P. G.The rapid development of megacities, and their growing connectedness across the world is becoming a distinct driver for emerging disease outbreaks. Early detection of unusual disease emergence and spread should therefore ...