Browsing Artikel in Fachzeitschriften by Subject "Software"
Now showing items 1-9 of 9
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2011-02-15ZeitschriftenartikelA clinical trial alert tool to recruit large patient samples and assess selection bias in general practice research Background: Many research projects in general practice face problems when recruiting patients, often resulting in low recruitment rates and an unknown selection bias, thus limiting their value for health services research. ...
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2015-06-15ZeitschriftenartikelMSProGene: integrative proteogenomics beyond six-frames and single nucleotide polymorphisms Ongoing advances in high-throughput technologies have facilitated accurate proteomic measurements and provide a wealth of information on genomic and transcript level. In proteogenomics, this multi-omics data is combined ...
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2013-03-26ZeitschriftenartikelMultiPSQ: A Software Solution for the Analysis of Diagnostic n-Plexed Pyrosequencing Reactions Background: Pyrosequencing can be applied for Single-Nucleotide-Polymorphism (SNP)-based pathogen typing or for providing sequence information of short DNA stretches. However, for some pathogens molecular typing cannot ...
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2012-04-06ZeitschriftenartikelOvercoming Species Boundaries in Peptide Identification with Bayesian Information Criterion-driven Error-tolerant Peptide Search (BICEPS) Currently, the reliable identification of peptides and proteins is only feasible when thoroughly annotated sequence databases are available. Although sequencing capacities continue to grow, many organisms remain without ...
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2012-04-06ZeitschriftenartikelOvercoming species boundaries in peptide identification with BICEPS Currently, the reliable identification of peptides and proteins is only feasible when thoroughly annotated sequence databases are available. While sequencing capacities continue to grow, many organisms remain without ...
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2014-06-15ZeitschriftenartikelPipasic: similarity and expression correction for strain-level identification and quantification in metaproteomics Motivation: Metaproteomic analysis allows studying the interplay of organisms or functional groups and has become increasingly popular also for diagnostic purposes. However, difficulties arise owing to the high sequence ...
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2015-09-17ZeitschriftenartikelRAMBO-K: Rapid and Sensitive Removal of Background Sequences from Next Generation Sequencing Data Background: The assembly of viral or endosymbiont genomes from Next Generation Sequencing (NGS) data is often hampered by the predominant abundance of reads originating from the host organism. These reads increase the ...
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2011-08-04Zeitschriftenartikelrapmad: Robust analysis of peptide microarray data Background: Peptide microarrays offer an enormous potential as a screening tool for peptidomics experiments and have recently seen an increased field of application ranging from immunological studies to systems biology. ...
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2015-07-30ZeitschriftenartikelSuRankCo: supervised ranking of contigs in de novo assemblies Background: Evaluating the quality and reliability of a de novo assembly and of single contigs in particular is challenging since commonly a ground truth is not readily available and numerous factors may influence ...