Browsing Artikel in Fachzeitschriften by Subject "Nanopore sequencing"

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2024-01-20Zeitschriftenartikel

Genome sequencing of the mpox virus 2022 outbreak with amplicon-based Oxford Nanopore MinION sequencing

Brinkmann, Annika; Pape, Katharina; Uddin, Steven; Woelk, Niklas; Förster, Sophie; Jessen, Heiko; Michel, Janine; Kohl, Claudia; Schaade, Lars; Nitsche, Andreas

We present an amplicon-based assay for MinION Nanopore sequencing of mpox virus (MPXV) genomes from clinical specimens, obtaining high-quality results with an average genome coverage of 99% for Ct values of up to 25, and ...
2023-01-04Zeitschriftenartikel

Nanopore-Based Enrichment of Antimicrobial Resistance Genes – A Case-Based Study

Viehweger, Adrian; Marquet, Mike; Hölzer, Martin; Dietze, Nadine; Pletz, Mathias W.; Brandt, Christian

Rapid screening of hospital admissions to detect asymptomatic carriers of resistant bacteria can prevent pathogen outbreaks. However, the resulting isolates rarely have their genome sequenced due to cost constraints and ...