Auflistung Artikel in Fachzeitschriften nach Schlagwort "Nanopore sequencing"

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2024-01-20Zeitschriftenartikel

Genome sequencing of the mpox virus 2022 outbreak with amplicon-based Oxford Nanopore MinION sequencing

Brinkmann, Annika; Pape, Katharina; Uddin, Steven; Woelk, Niklas; Förster, Sophie; Jessen, Heiko; Michel, Janine; Kohl, Claudia; Schaade, Lars; Nitsche, Andreas

We present an amplicon-based assay for MinION Nanopore sequencing of mpox virus (MPXV) genomes from clinical specimens, obtaining high-quality results with an average genome coverage of 99% for Ct values of up to 25, and ...
2023-01-04Zeitschriftenartikel

Nanopore-Based Enrichment of Antimicrobial Resistance Genes – A Case-Based Study

Viehweger, Adrian; Marquet, Mike; Hölzer, Martin; Dietze, Nadine; Pletz, Mathias W.; Brandt, Christian

Rapid screening of hospital admissions to detect asymptomatic carriers of resistant bacteria can prevent pathogen outbreaks. However, the resulting isolates rarely have their genome sequenced due to cost constraints and ...
2024-05-28Zeitschriftenartikel

Sequencing accuracy and systematic errors of nanopore direct RNA sequencing

Liu-Wei, Wang; van der Toorn, Wiep; Bohn, Patrick; Hölzer, Martin; Smyth, Redmond P.; von Kleist, Max

Background: Direct RNA sequencing (dRNA-seq) on the Oxford Nanopore Technologies (ONT) platforms can produce reads covering up to full-length gene transcripts, while containing decipherable information about RNA base ...