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Auflistung Artikel in Fachzeitschriften nach Autor "Fuchs, Stephan"
Anzeige der Publikationen 1-20 von 34
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2020-11-28ZeitschriftenartikelA Multi-Omics Protocol for Swine Feces to Elucidate Longitudinal Dynamics in Microbiome Structure and Function Riedel, Katharina; Gierse, Laurin Christopher; Meene, Alexander; Schultz, Daniel; Schwaiger, Theresa; Karte, Claudia; Schröder, Charlotte; Wang, Haitao; Wünsche, Christine; Methling, Karen; Kreikemeyer, Bernd; Fuchs, Stephan; Bernhardt, Jörg; Becher, Dörte; Lalk, Michael; Urich, Tim; KoInfekt Study GroupSwine are regarded as promising biomedical models, but the dynamics of their gastrointestinal microbiome have been much less investigated than that of humans or mice. The aim of this study was to establish an integrated ...
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2016-02-19ZeitschriftenartikelA Staphylococcus aureus Proteome Overview: Shared and Specific Proteins and Protein Complexes from Representative Strains of All Three Clades Liang, Chunguang; Schaack, Dominik; Srivastava, Mugdha; Gupta, Shishir K.; Sarukhanyan, Edita; Giese, Anne; Pagels, Martin; Romanov, Natalie; Pané-Farré, Jan; Fuchs, Stephan; Dandekar, ThomasStaphylococcus aureus is an important model organism and pathogen. This S. aureus proteome overview details shared and specific proteins and selected virulence-relevant protein complexes from representative strains of all ...
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2021-03-29ZeitschriftenartikelAdaptation of Dinoroseobacter shibae to oxidative stress and the specific role of RirA Beier, Nicole; Kucklick, Martin; Fuchs, Stephan; Mustafayeva, Ayten; Behringer, Maren; Härtig, Elisabeth; Jahn, Dieter; Engelmann, SusanneDinoroseobacter shibae living in the photic zone of marine ecosystems is frequently exposed to oxygen that forms highly reactive species. Here, we analysed the adaptation of D. shibae to different kinds of oxidative ...
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2022-08-15ZeitschriftenartikelAdvancing Precision Vaccinology by Molecular and Genomic Surveillance of Severe Acute Respiratory Syndrome Coronavirus 2 in Germany, 2021 Oh, Djin-Ye; Hölzer, Martin; Paraskevopolou, Sofia; Tofimova, Maria; Hartkopf, Felix; Budt, Matthias; Wedde, Marianne; Richard, Hugues; Haldemann, Berit; Domaszewska, Teresa; Reiche, Janine; Keeren, Kathrin; Radonić, Aleksander; Ramos Calderón, Julia Patricia; Smith, Maureen Rebecca; Brinkmann, Annika; Trappe, Kathrin; Drechsel, Oliver; Klaper, Kathleen; Hein, Sascha; Hildt, Eberhardt; Haas, Walter; Calvignac-Spencer, Sébastien; Semmler, Torsten; Dürrwald, Ralf; Thürmer, Andrea; Drosten, Christian; Fuchs, Stephan; Kröger, Stefan; von Kleist, Max; Wolff, Thorsten; Integrated Molecular Surveillance for SARS-CoV-2 (IMS-SC2) Laboratory NetworkBackground Comprehensive pathogen genomic surveillance represents a powerful tool to complement and advance precision vaccinology. The emergence of the Alpha variant in December 2020 and the resulting efforts to track ...
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2017-11-24ZeitschriftenartikelAureoWiki ̵ The repository of the Staphylococcus aureus research and annotation community Fuchs, Stephan; Mehlan, Henry; Bernhardt, Jörg; Hennig, André; Michalik, Stephan; Surmann, Kristin; Pané-Farré, Jan; Giese, Anne; Weiss, Stefan; Backert, Linus; Herbig, Alexander; Nieselt, Kay; Hecker, Michael; Völker, Uwe; Mäder, UlrikeIn light of continuously accumulating data and knowledge on major human pathogens, comprehensive and up-to-date sources of easily accessible information are urgently required. The AureoWiki database (http://aureowiki.med ...
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2018-01-24ZeitschriftenartikelComparative analysis of Salivette® and paraffin gum preparations for establishment of a metaproteomics analysis pipeline for stimulated human saliva Rabe, Alexander; Salazar, Manuela Gesell; Fuchs, Stephan; Kocher, Thomas; Völker, UweThe value of saliva as a diagnostic tool can be increased by taxonomic and functional analyses of the microbiota as recently demonstrated. In this proof-of-principle study, we compare two collection methods (Salivette® ...
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2016-06-17ZeitschriftenartikelComparison of six commercial kits to extract bacterial chromosome and plasmid DNA for MiSeq sequencing Becker, Laura; Steglich, Matthias; Fuchs, Stephan; Werner, Guido; Nübel, UlrichWe compared commercial kits for extraction of genomic DNA from the Gram-negative bacterium Klebsiella pneumoniae for subsequent Miseq sequencing. Purification of DNA was based on matrix binding (silica or anion exchange ...
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2016-07-28ZeitschriftenartikelComplete Genome Sequences of Two Methicillin-Sensitive Staphylococcus aureus Isolates Representing a Population Subset Highly Prevalent in Human Colonization Weber, Robert E.; Layer, Franziska; Fuchs, Stephan; Bender, Jennifer K.; Fiedler, Stefan; Werner, Guido; Strommenger, BirgitHere, we report the high-quality draft genome sequences of two methicillin-susceptible Staphylococcus aureus isolates, 08-02119 and 08-02300. Belonging to sequence type 582 (ST582) and ST7, both isolates are representatives ...
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2020-11-04ZeitschriftenartikelComputational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research Hufsky, Franziska; Lamkiewicz, Kevin; Almeida, Alexandre; Aouacheria, Abdel; Arighi, Cecilia; Bateman, Alex; Baumbach, Jan; Beerenwinkel, Niko; Brandt, Christian; Cacciabue, Marco; Chuguransky, Sara; Drechsel, Oliver; Finn, Robert D; Fritz, Adrian; Fuchs, Stephan; Hattab, Georges; Hauschild, Anne-Christin; Heider, Dominik; Hoffmann, Marie; Hölzer, Martin; Hoops, Stefan; Kaderali, Lars; Kalvari, Ioanna; von Kleist, Max; Kmiecinski, Renó; Kühnert, Denise; Lasso, Gorka; Libin, Pieter; List, Markus; Löchel, Hannah F.; Martin, Maria J.; Martin, Roman; Matschinske, Julian; McHardy, Alice C.; Mendes, Pedro; Mistry, Jaina; Navratil, Vincent; Nawrocki, Eric P.; O'Toole, Áine Niamh; Ontiveros-Palacios, Nancy; Petrov, Anton I; Rangel-Pineros, Guillermo; Redaschi, Nicole; Reimering, Susanne; Reinert, Knut; Reyes, Alejandro; RIchardson, Lorna; Robertson, David L.; Sadegh, Sepideh; Singer, Joshua B.; Theys, Kristof; Upton, Chris; Welzel, Marius; Williams, Lowri; Marz, ManjaSARS-CoV-2 (severe acute respiratory syndrome coronavirus 2) is a novel virus of the family Coronaviridae. The virus causes the infectious disease COVID-19. The biology of coronaviruses has been studied for many years. ...
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2021-04-27ZeitschriftenartikelCorrigendum: Genome-Wide Association Studies for the Detection of Genetic Variants Associated With Daptomycin and Ceftaroline Resistance in Staphylococcus aureus Weber, Robert E.; Fuchs, Stephan; Layer, Franziska; Sommer, Anna; Bender, Jennifer K.; Thürmer, Andrea; Werner, Guido; Strommenger, Birgit
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2016-06-27ZeitschriftenartikelCosts of life - Dynamics of the protein inventory of Staphylococcus aureus during anaerobiosis Zühlke, Daniela; Dörries, Kirsten; Bernhardt, Jörg; Maaß, Sandra; Muntel, Jan; Liebscher, Volkmar; Pané-Farré, Jan; Riedel, Katharina; Lalk, Michael; Völker, Uwe; Engelmann, Susanne; Becher, Dörte; Fuchs, Stephan; Hecker, MichaelAbsolute protein quantification was applied to follow the dynamics of the cytoplasmic proteome of Staphylococcus aureus in response to long-term oxygen starvation. For 1,168 proteins, the majority of all expressed proteins, ...
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2021-12-15ZeitschriftenartikelCritical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows van den Bossche, Tim; Kunath, Benoit J.; Schallert, Kay; Schäpe, Stephanie S.; Abraham, Paul E.; Armengaud, Jean; Arntzen, Magnus Ø.; Bassignani, Ariane; Benndorf, Dirk; fuchs, Stephan; Giannone, Richard J.; Griffin, Timothy J.; Hagen, Live H.; Halder, Rashi; Henry, Céline; Hettich, Robert L.; Heyer, Robert; Jagtap, Patrik; Jehmlich, Nico; Jensen, Marlene; Juste, Catherine; Kleiner, Manuel; Langella, Olivier; Lehmann, Theresa; Leith, Emma; May, Patrick; Mesuere, Patrick; Miotello, Guylaine; Peters, Samantha L.; Pible, Olivier; Queiros, Pedro T.; Reichl, Udo; Renard, Bernhard Y.; Schiebenhoefer, Henning; Sczyrba, Alexander; Tanca, Allesandro; Trappe, Kathrin; Trezzi, Jean-Pierre; Uzzau, Sergio; Verschaffelt, Pieter; von Bergen, Martin; Wilmes, Paul; Wolf, Maximilian; Martens, Lennart; Muth, ThiloMetaproteomics has matured into a powerful tool to assess functional interactions in microbial communities. While many metaproteomic workflows are available, the impact of method choice on results remains unclear. Here, ...
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2018-04-09ZeitschriftenartikelEffektives Management eines Ausbruchs mit multiresistenten Klebsiella pneumoniae in der Neurorehabilitation Dohle, Christian; Korr, Gerit; Friedrichs, Michael; Kullmann, Volker; Tung, Mei-Lin; Kaase, Martin; Rüssmann, Holger; Sissolak, Dagmar; Werber, Dirk; Becker, Laura; Fuchs, Stephan; Pfeifer, Yvonne; Semmler, Torsten; Widders, Gudrun; Eckmanns, Tim; Werner, Guido; Zill, Edith; Haller, SebastianHintergrund Neben Akutkliniken sind auch Rehabilitationskliniken zunehmend von der Problematik der multiresistenten Erreger betroffen. Lange Verweildauern und hohe Behandlungsintensitäten stellen dabei besondere ...
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2021-01-19ZeitschriftenartikelGenome-Based Analyses of Fitness Effects and Compensatory Changes Associated with Acquisition of blaCMY-, blaCTX-M-, and blaOXA-48/VIM-1-Containing Plasmids in Escherichia coli Pietsch, Michael; Pfeifer, Yvonne; Fuchs, Stephan; Werner, GuidoBackground: Resistance plasmids are under selective conditions beneficial for the bacterial host, but in the absence of selective pressure, this carriage may cause fitness costs. Compensation of this fitness burden is ...
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2018-05-02ZeitschriftenartikelGenome-based analysis of Carbapenemase-producing Klebsiella pneumoniae isolates from German hospital patients, 2008-2014 Becker, Laura; Kaase, Martin; Pfeifer, Yvonne; Fuchs, Stephan; Reuss, Annicka; von Laer, Anja; Abu Sin, Muna; Korte-Berwanger, Miriam; Gatermann, Sören; Werner, GuidoBackground By using whole genome sequence data we aimed at describing a population snapshot of carbapenemase-producing K. pneumoniae isolated from hospitalized patients in Germany between 2008 and 2014. Methods We ...
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2021-02-15ZeitschriftenartikelGenome-Wide Association Studies for the Detection of Genetic Variants Associated With Daptomycin and Ceftaroline Resistance in Staphylococcus aureus Weber, Robert E.; Fuchs, Stephan; Layer, Franziska; Sommer, Anna; Bender, Jennifer K.; Thürmer, Andrea; Werner, Guido; Strommenger, BirgitBackground: As next generation sequencing (NGS) technologies have experienced a rapid development over the last decade, the investigation of the bacterial genetic architecture reveals a high potential to dissect causal ...
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2018-02-15ZeitschriftenartikelHigh-Throughput Quantification of Bacterial-Cell Interactions Using Virtual Colony Counts Hoffmann, Stefanie; Walter, Steffi; Blume, Anne-Kathrin; Fuchs, Stephan; Schmidt, Christiane; Scholz, Annemarie; Gerlach, Roman G.The quantification of bacteria in cell culture infection models is of paramount importance for the characterization of host-pathogen interactions and pathogenicity factors involved. The standard to enumerate bacteria in ...
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2019-12-17ZeitschriftenartikelIS26-Mediated Transfer of blaNDM–1 as the Main Route of Resistance Transmission During a Polyclonal, Multispecies Outbreak in a German Hospital Weber, Robert E.; Pietsch, Michael; Frühauf, Andre; Pfeifer, Yvonne; Martin, Maria; Luft, Dirk; Gatermann, Sören; Pfennigwerth, Niels; Kaase, Martin; Werner, Guido; Fuchs, StephanOne of the most demanding challenges in infection control is the worldwide dissemination of multidrug-resistant (MDR) bacteria in clinical settings. Especially the increasing prevalence of carbapenemase producing Gram-negative ...
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2022-09-16ZeitschriftenartikelListeria monocytogenes genes supporting growth under standard laboratory cultivation conditions and during macrophage infection Fischer, Martin A.; Engelgeh, Tim; Rothe, Patricia; Fuchs, Stephan; Thürmer, Andrea; Halbedel, SvenThe Gram-positive bacterium Listeria monocytogenes occurs widespread in the environment and infects humans when ingested along with contaminated food. Such infections are particularly dangerous for risk group patients, for ...
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2019-08-26ZeitschriftenartikelMetaproteomics analysis of microbial diversity of human saliva and tongue dorsum in young healthy individuals Rabe, Alexander; Salazar, Manuela Gesell; Michalik, Stephan; Fuchs, Stephan; Welk, Alexander; Kocher, Thomas; Völker, UweBackground: The human oral microbiome influences initiation or progression of diseases like caries or periodontitis. Metaproteomics approaches enable the simultaneous investigation of microbial and host proteins and their ...